Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 PMS2P4-201ENST00000412466 1052 ntBASIC15.62■□□□□ 0.09
SHOX2O60902 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.62■□□□□ 0.09
SHOX2O60902 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.62■□□□□ 0.09
SHOX2O60902 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.62■□□□□ 0.09
SHOX2O60902 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.62■□□□□ 0.09
SHOX2O60902 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 AC073548.1-201ENST00000624088 1882 ntBASIC15.61■□□□□ 0.09
SHOX2O60902 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 MIR5100-201ENST00000579544 119 ntBASIC15.61■□□□□ 0.09
SHOX2O60902 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 AC092119.3-201ENST00000612618 583 ntBASIC15.61■□□□□ 0.09
SHOX2O60902 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.61■□□□□ 0.09
SHOX2O60902 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 AC019294.4-201ENST00000561777 2905 ntBASIC15.61■□□□□ 0.09
SHOX2O60902 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.61■□□□□ 0.09
SHOX2O60902 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHOX2O60902 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.6■□□□□ 0.09
SHOX2O60902 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 AP005117.1-201ENST00000584346 1413 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 AC068760.1-201ENST00000493579 1953 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 AL023775.1-201ENST00000454907 1746 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.6■□□□□ 0.09
SHOX2O60902 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.6■□□□□ 0.09
SHOX2O60902 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.6■□□□□ 0.09
SHOX2O60902 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
SHOX2O60902 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.6■□□□□ 0.09
SHOX2O60902 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.6■□□□□ 0.09
SHOX2O60902 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 AC092329.2-201ENST00000598402 547 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 AC138894.3-201ENST00000603787 634 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC15.6■□□□□ 0.09
SHOX2O60902 AC023794.5-201ENST00000564380 2157 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 1403.9 ms