Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 AC018892.3-201ENST00000623986 2499 ntBASIC12.58□□□□□ -0.4
HOXA3O43365 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.58□□□□□ -0.4
HOXA3O43365 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA3O43365 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA3O43365 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
HOXA3O43365 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.58□□□□□ -0.4
HOXA3O43365 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 LINC02199-201ENST00000506655 2702 ntBASIC12.58□□□□□ -0.4
HOXA3O43365 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
HOXA3O43365 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA3O43365 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA3O43365 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.57□□□□□ -0.4
HOXA3O43365 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA3O43365 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA3O43365 AC005229.1-201ENST00000392885 409 ntBASIC12.57□□□□□ -0.4
HOXA3O43365 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
HOXA3O43365 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXA3O43365 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA3O43365 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.57□□□□□ -0.4
HOXA3O43365 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC12.57□□□□□ -0.4
HOXA3O43365 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC12.57□□□□□ -0.4
HOXA3O43365 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HOXA3O43365 AL121723.1-201ENST00000445194 1519 ntBASIC12.57□□□□□ -0.4
HOXA3O43365 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HOXA3O43365 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HOXA3O43365 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA3O43365 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.56□□□□□ -0.4
HOXA3O43365 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA3O43365 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA3O43365 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
HOXA3O43365 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
HOXA3O43365 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
HOXA3O43365 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HOXA3O43365 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.56□□□□□ -0.4
HOXA3O43365 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HOXA3O43365 MIR648-201ENST00000385046 94 ntBASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms