Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 AL589935.2-201ENST00000616471 1231 ntBASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 AC023024.2-201ENST00000623561 1993 ntBASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 PCDHA3-202ENST00000532566 4594 ntBASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 AC084364.1-201ENST00000551967 1556 ntBASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HIF3AQ9Y2N7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AL513477.1-201ENST00000602865 2407 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AL080243.2-201ENST00000418783 582 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 CNN2P11-201ENST00000429351 262 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 SERBP1P3-201ENST00000459980 809 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms