Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 AC125807.1-201ENST00000483097 614 ntBASIC12.67□□□□□ -0.38
FOXA2Q9Y261 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 AC097359.3-201ENST00000603982 1210 ntBASIC12.67□□□□□ -0.38
FOXA2Q9Y261 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 PCDHA3-202ENST00000532566 4594 ntBASIC12.67□□□□□ -0.38
FOXA2Q9Y261 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 LINC02228-204ENST00000642115 2962 ntBASIC12.67□□□□□ -0.38
FOXA2Q9Y261 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.67□□□□□ -0.38
FOXA2Q9Y261 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA2Q9Y261 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 CICP24-201ENST00000605464 2705 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC136604.1-201ENST00000418535 575 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 MTND6P24-201ENST00000440466 518 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC105021.1-202ENST00000570572 669 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC015911.4-201ENST00000588022 1070 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC023024.2-201ENST00000623561 1993 ntBASIC12.66□□□□□ -0.38
FOXA2Q9Y261 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
FOXA2Q9Y261 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms