Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AC124283.3-201ENST00000570869 594 ntBASIC14.34□□□□□ -0.11
LRFN1Q9P244 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AL512343.1-201ENST00000605837 169 ntBASIC14.34□□□□□ -0.11
LRFN1Q9P244 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LRFN1Q9P244 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LRFN1Q9P244 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.33□□□□□ -0.11
LRFN1Q9P244 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LRFN1Q9P244 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LRFN1Q9P244 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 MIR658-201ENST00000385210 100 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 MIR1909-201ENST00000411312 80 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SLC25A47P1-201ENST00000531577 414 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 PTP4A1P2-201ENST00000546033 454 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 MIR5189-201ENST00000577370 114 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC233724.13-201ENST00000598383 410 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC008741.2-201ENST00000612792 3115 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 AC018665.1-201ENST00000622927 1362 ntBASIC14.33□□□□□ -0.12
LRFN1Q9P244 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.33□□□□□ -0.12
LRFN1Q9P244 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LRFN1Q9P244 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LRFN1Q9P244 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
LRFN1Q9P244 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms