Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 HLA-V-204ENST00000476601 1289 ntBASIC16.14■□□□□ 0.17
PCDH9Q9HC56 DUX4L27-201ENST00000554796 1261 ntBASIC16.14■□□□□ 0.17
PCDH9Q9HC56 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 AC073592.8-201ENST00000624126 511 ntBASIC16.14■□□□□ 0.17
PCDH9Q9HC56 AC106881.1-201ENST00000605849 3329 ntBASIC16.14■□□□□ 0.17
PCDH9Q9HC56 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 AC007292.2-201ENST00000593524 1812 ntBASIC16.14■□□□□ 0.17
PCDH9Q9HC56 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH9Q9HC56 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 ZBED1P1-201ENST00000502364 1930 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 FO538757.1-201ENST00000623083 1397 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 MROH4P-201ENST00000431302 1578 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 MIR943-201ENST00000401286 94 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 RPL37AP1-201ENST00000412502 279 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AL080243.2-201ENST00000418783 582 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 TREML5P-201ENST00000421694 576 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 RFPL4AP1-201ENST00000530883 850 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AL158211.3-201ENST00000607385 239 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AL138828.2-201ENST00000615812 383 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AC093512.1-201ENST00000617969 520 ntBASIC16.13■□□□□ 0.17
PCDH9Q9HC56 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDH9Q9HC56 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms