Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 MIR658-201ENST00000385210 100 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SOCS2P1-201ENST00000417727 557 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 KRT43P-201ENST00000434019 910 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SLC25A47P1-201ENST00000531577 414 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AC120045.2-201ENST00000567334 178 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AL049840.4-201ENST00000602422 811 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 AL121723.1-201ENST00000445194 1519 ntBASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAIPQ9BWF2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AC104640.1-201ENST00000562617 2109 ntBASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AL133267.1-201ENST00000398220 340 ntBASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 AC092384.3-202ENST00000564646 2873 ntBASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
TRAIPQ9BWF2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAIPQ9BWF2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAIPQ9BWF2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms