Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC13.33□□□□□ -0.28
COL12A1Q99715 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC13.33□□□□□ -0.28
COL12A1Q99715 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC13.33□□□□□ -0.28
COL12A1Q99715 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AL139094.1-201ENST00000405549 1188 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.33□□□□□ -0.28
COL12A1Q99715 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 PEBP1P2-201ENST00000603980 558 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 AC107464.3-201ENST00000609172 737 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 MIR557-201ENST00000385239 98 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AC004554.1-201ENST00000422830 1468 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 TPM1-223ENST00000560445 485 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 RN7SL163P-201ENST00000583100 276 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AC005041.3-201ENST00000606287 649 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 AC021016.3-201ENST00000608367 477 ntBASIC13.32□□□□□ -0.28
COL12A1Q99715 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.32□□□□□ -0.28
COL12A1Q99715 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
COL12A1Q99715 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL12A1Q99715 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.31□□□□□ -0.28
COL12A1Q99715 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms