Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDCA3Q99618 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDCA3Q99618 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
CDCA3Q99618 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
CDCA3Q99618 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDCA3Q99618 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC004899.1-201ENST00000424687 1714 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AL157791.1-201ENST00000553667 1699 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CDCA3Q99618 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
CDCA3Q99618 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC092171.3-201ENST00000610122 2651 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CDCA3Q99618 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.99■□□□□ 0.15
CDCA3Q99618 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 FAM58BP-201ENST00000439056 645 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 PUDPP3-201ENST00000445368 636 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.99■□□□□ 0.15
CDCA3Q99618 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.99■□□□□ 0.15
CDCA3Q99618 DUX4L47-201ENST00000566374 394 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC068587.8-201ENST00000641239 219 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC055811.4-201ENST00000624039 1754 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AP000593.2-201ENST00000542775 1433 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.99■□□□□ 0.15
CDCA3Q99618 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.99■□□□□ 0.15
CDCA3Q99618 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDCA3Q99618 AC106820.2-201ENST00000563775 3264 ntBASIC15.99■□□□□ 0.15
CDCA3Q99618 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.98■□□□□ 0.15
CDCA3Q99618 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.98■□□□□ 0.15
CDCA3Q99618 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 GHSR-202ENST00000427970 912 ntBASIC15.98■□□□□ 0.15
CDCA3Q99618 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.98■□□□□ 0.15
CDCA3Q99618 AC125604.1-201ENST00000496255 707 ntBASIC15.98■□□□□ 0.15
CDCA3Q99618 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.98■□□□□ 0.15
CDCA3Q99618 LTB4R2-202ENST00000528054 3092 ntBASIC15.98■□□□□ 0.15
CDCA3Q99618 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 AC069224.1-201ENST00000566372 1715 ntBASIC15.98■□□□□ 0.15
CDCA3Q99618 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
CDCA3Q99618 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.98■□□□□ 0.15
CDCA3Q99618 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.98■□□□□ 0.15
CDCA3Q99618 AL162426.1-201ENST00000624141 743 ntBASIC15.98■□□□□ 0.15
CDCA3Q99618 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.98■□□□□ 0.15
CDCA3Q99618 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.98■□□□□ 0.15
CDCA3Q99618 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDCA3Q99618 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms