Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 AP003398.1-201ENST00000531124 318 ntBASIC25.03■■□□□ 1.6
IFT140Q96RY7 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
IFT140Q96RY7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
IFT140Q96RY7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
IFT140Q96RY7 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 GCSHP3-201ENST00000431120 391 ntBASIC25.02■■□□□ 1.6
IFT140Q96RY7 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 PLS3-210ENST00000626746 216 ntTSL 4 BASIC25.02■■□□□ 1.6
IFT140Q96RY7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 AC018695.7-201ENST00000624587 2492 ntBASIC25.01■■□□□ 1.59
IFT140Q96RY7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 COX20P1-201ENST00000366529 357 ntBASIC25.01■■□□□ 1.59
IFT140Q96RY7 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 SKA2-202ENST00000437036 625 ntTSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 AL354861.1-201ENST00000445213 355 ntBASIC25.01■■□□□ 1.59
IFT140Q96RY7 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC25.01■■□□□ 1.59
IFT140Q96RY7 AC133540.1-201ENST00000620845 1019 ntBASIC25.01■■□□□ 1.59
IFT140Q96RY7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
IFT140Q96RY7 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 AC069224.1-201ENST00000566372 1715 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 RNA5SP359-201ENST00000364838 113 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 BANF1P3-201ENST00000412556 261 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 ACTBP7-201ENST00000418351 1124 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC25■■□□□ 1.59
IFT140Q96RY7 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC25■■□□□ 1.59
IFT140Q96RY7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 NEU3-207ENST00000534628 746 ntTSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
IFT140Q96RY7 MIR4472-1-201ENST00000584349 80 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC25■■□□□ 1.59
IFT140Q96RY7 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 AC144522.1-201ENST00000625111 1658 ntBASIC25■■□□□ 1.59
IFT140Q96RY7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
IFT140Q96RY7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
IFT140Q96RY7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 RAN-210ENST00000541630 1475 ntTSL 2 BASIC24.99■■□□□ 1.59
IFT140Q96RY7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
IFT140Q96RY7 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms