Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP47Q96K76 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 HYMAI-201ENST00000635591 3347 ntBASIC21.65■■□□□ 1.06
USP47Q96K76 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
USP47Q96K76 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 BRF1-202ENST00000379932 884 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC21.65■■□□□ 1.06
USP47Q96K76 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC21.65■■□□□ 1.06
USP47Q96K76 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC21.65■■□□□ 1.06
USP47Q96K76 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
USP47Q96K76 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC21.65■■□□□ 1.06
USP47Q96K76 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.65■■□□□ 1.06
USP47Q96K76 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 AC104640.1-201ENST00000562617 2109 ntBASIC21.65■■□□□ 1.06
USP47Q96K76 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC21.65■■□□□ 1.06
USP47Q96K76 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC21.65■■□□□ 1.06
USP47Q96K76 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP47Q96K76 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 PKD1P1-201ENST00000458669 6805 ntBASIC21.64■■□□□ 1.06
USP47Q96K76 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
USP47Q96K76 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
USP47Q96K76 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC21.64■■□□□ 1.06
USP47Q96K76 HLA-K-203ENST00000430151 1046 ntBASIC21.64■■□□□ 1.06
USP47Q96K76 AC004066.1-201ENST00000502488 802 ntBASIC21.64■■□□□ 1.06
USP47Q96K76 AC022137.2-201ENST00000503482 481 ntBASIC21.64■■□□□ 1.06
USP47Q96K76 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC21.64■■□□□ 1.06
USP47Q96K76 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
USP47Q96K76 AP001063.1-201ENST00000568332 529 ntBASIC21.64■■□□□ 1.06
USP47Q96K76 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC21.64■■□□□ 1.06
USP47Q96K76 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
USP47Q96K76 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
USP47Q96K76 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP47Q96K76 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
USP47Q96K76 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC21.64■■□□□ 1.05
USP47Q96K76 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
USP47Q96K76 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 AL359258.3-201ENST00000622910 2331 ntBASIC21.64■■□□□ 1.05
USP47Q96K76 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC21.64■■□□□ 1.05
USP47Q96K76 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
USP47Q96K76 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP47Q96K76 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 MROH4P-201ENST00000431302 1578 ntBASIC21.63■■□□□ 1.05
USP47Q96K76 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.63■■□□□ 1.05
USP47Q96K76 AC068587.3-201ENST00000526613 355 ntBASIC21.63■■□□□ 1.05
USP47Q96K76 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC21.63■■□□□ 1.05
USP47Q96K76 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC21.63■■□□□ 1.05
USP47Q96K76 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC21.63■■□□□ 1.05
USP47Q96K76 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP47Q96K76 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USP47Q96K76 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms