Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC127383.1-201ENST00000444697 1800 ntBASIC18.86■□□□□ 0.61
VPS53Q5VIR6 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 SLED1-202ENST00000512051 380 ntBASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS53Q5VIR6 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC023310.3-201ENST00000557027 670 ntBASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC100756.1-201ENST00000562736 682 ntBASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC138749.3-201ENST00000567691 622 ntBASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC116165.1-201ENST00000611806 668 ntBASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC008761.3-201ENST00000624803 892 ntBASIC18.84■□□□□ 0.61
VPS53Q5VIR6 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS53Q5VIR6 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 AC006058.4-201ENST00000624016 1670 ntBASIC18.83■□□□□ 0.61
VPS53Q5VIR6 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS53Q5VIR6 AC112693.3-201ENST00000624819 1983 ntBASIC18.83■□□□□ 0.61
VPS53Q5VIR6 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 SPDYE19P-201ENST00000338590 713 ntBASIC18.83■□□□□ 0.6
VPS53Q5VIR6 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AC015922.1-201ENST00000421102 1152 ntBASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms