Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
FOXA1P55317 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 KRT18P64-201ENST00000434946 1219 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 DNAJB3-201ENST00000446806 729 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 AC112482.1-201ENST00000492080 688 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 AP000344.2-201ENST00000512987 629 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.12■□□□□ 0.01
FOXA1P55317 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
FOXA1P55317 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 AC009093.7-201ENST00000623853 1223 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 AC007191.1-201ENST00000623179 2995 ntBASIC15.12■□□□□ 0.01
FOXA1P55317 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA1P55317 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA1P55317 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.11■□□□□ 0.01
FOXA1P55317 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 RPL5P21-201ENST00000404620 815 ntBASIC15.11■□□□□ 0.01
FOXA1P55317 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 AL079307.3-201ENST00000556114 283 ntBASIC15.11■□□□□ 0.01
FOXA1P55317 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.11■□□□□ 0.01
FOXA1P55317 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 CICP14-201ENST00000629111 2732 ntBASIC15.11■□□□□ 0.01
FOXA1P55317 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 AP000845.1-201ENST00000581677 2131 ntBASIC15.11■□□□□ 0.01
FOXA1P55317 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA1P55317 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms