Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC103810.10-201ENST00000606504 343 ntBASIC21.23■□□□□ 0.99
MSH6P52701 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
MSH6P52701 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
MSH6P52701 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH6P52701 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 AL157792.1-201ENST00000488281 530 ntBASIC21.23■□□□□ 0.99
MSH6P52701 AC022616.1-201ENST00000518688 554 ntBASIC21.23■□□□□ 0.99
MSH6P52701 HNRNPA1P36-201ENST00000521313 955 ntBASIC21.23■□□□□ 0.99
MSH6P52701 SNORD3B-2-202ENST00000571722 791 ntBASIC21.23■□□□□ 0.99
MSH6P52701 MIR4649-201ENST00000582839 64 ntBASIC21.23■□□□□ 0.99
MSH6P52701 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC21.23■□□□□ 0.99
MSH6P52701 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.22■□□□□ 0.99
MSH6P52701 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
MSH6P52701 AC092171.3-201ENST00000610122 2651 ntBASIC21.22■□□□□ 0.99
MSH6P52701 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.22■□□□□ 0.99
MSH6P52701 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 AL627231.1-201ENST00000394467 1125 ntBASIC21.22■□□□□ 0.99
MSH6P52701 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC21.22■□□□□ 0.99
MSH6P52701 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH6P52701 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC21.22■□□□□ 0.99
MSH6P52701 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC21.22■□□□□ 0.99
MSH6P52701 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC21.22■□□□□ 0.99
MSH6P52701 AC138894.2-201ENST00000602838 371 ntBASIC21.22■□□□□ 0.99
MSH6P52701 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
MSH6P52701 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC21.22■□□□□ 0.99
MSH6P52701 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH6P52701 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
MSH6P52701 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH6P52701 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 CA12-203ENST00000422263 2556 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH6P52701 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 CLUHP2-201ENST00000426660 1303 ntBASIC21.21■□□□□ 0.99
MSH6P52701 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
MSH6P52701 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
MSH6P52701 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 SERF2-206ENST00000409291 807 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC21.21■□□□□ 0.99
MSH6P52701 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 AC009779.1-201ENST00000551138 283 ntBASIC21.21■□□□□ 0.99
MSH6P52701 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH6P52701 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms