Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 SRD5A3P1-201ENST00000603021 949 ntBASIC15.33■□□□□ 0.04
SHMT2P34897 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 SNX18-202ENST00000343017 3140 ntBASIC15.32■□□□□ 0.04
SHMT2P34897 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.32■□□□□ 0.04
SHMT2P34897 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.32■□□□□ 0.04
SHMT2P34897 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SHMT2P34897 RPL13P2-201ENST00000440687 659 ntBASIC15.32■□□□□ 0.04
SHMT2P34897 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 AC093004.1-201ENST00000508850 424 ntBASIC15.32■□□□□ 0.04
SHMT2P34897 SLED1-202ENST00000512051 380 ntBASIC15.32■□□□□ 0.04
SHMT2P34897 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
SHMT2P34897 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.32■□□□□ 0.04
SHMT2P34897 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHMT2P34897 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.32■□□□□ 0.04
SHMT2P34897 AL607033.1-201ENST00000623900 1599 ntBASIC15.32■□□□□ 0.04
SHMT2P34897 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.31■□□□□ 0.04
SHMT2P34897 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.31■□□□□ 0.04
SHMT2P34897 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 AC074338.1-201ENST00000416825 156 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 AC015922.1-201ENST00000421102 1152 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 MEP1AP4-201ENST00000423244 1087 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.31■□□□□ 0.04
SHMT2P34897 SPDYE18-201ENST00000510091 1050 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.31■□□□□ 0.04
SHMT2P34897 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.31■□□□□ 0.04
SHMT2P34897 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SHMT2P34897 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 AC138761.1-201ENST00000584393 385 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 LINC01115-203ENST00000606068 577 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.31■□□□□ 0.04
SHMT2P34897 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.31■□□□□ 0.04
SHMT2P34897 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
SHMT2P34897 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
SHMT2P34897 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.31■□□□□ 0.04
SHMT2P34897 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.31■□□□□ 0.04
SHMT2P34897 SSR4P1-203ENST00000599569 2260 ntBASIC15.31■□□□□ 0.04
SHMT2P34897 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms