Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
CIITAP33076 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CIITAP33076 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.48■□□□□ 0.39
CIITAP33076 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 GHSR-202ENST00000427970 912 ntBASIC17.48■□□□□ 0.39
CIITAP33076 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 AC093433.1-201ENST00000458048 571 ntBASIC17.48■□□□□ 0.39
CIITAP33076 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.48■□□□□ 0.39
CIITAP33076 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.48■□□□□ 0.39
CIITAP33076 AC004066.1-201ENST00000502488 802 ntBASIC17.48■□□□□ 0.39
CIITAP33076 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CIITAP33076 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CIITAP33076 AC015936.2-201ENST00000593177 259 ntBASIC17.48■□□□□ 0.39
CIITAP33076 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 KRT8P44-201ENST00000441609 1350 ntBASIC17.48■□□□□ 0.39
CIITAP33076 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.48■□□□□ 0.39
CIITAP33076 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 AC007787.1-201ENST00000588095 1583 ntBASIC17.48■□□□□ 0.39
CIITAP33076 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CIITAP33076 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CIITAP33076 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 AC008741.2-201ENST00000612792 3115 ntBASIC17.47■□□□□ 0.39
CIITAP33076 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CIITAP33076 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CIITAP33076 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 TTTY23B-201ENST00000442790 549 ntBASIC17.47■□□□□ 0.39
CIITAP33076 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 AC009486.1-201ENST00000569860 813 ntBASIC17.47■□□□□ 0.39
CIITAP33076 SAMD11P1-201ENST00000571429 661 ntBASIC17.47■□□□□ 0.39
CIITAP33076 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.47■□□□□ 0.39
CIITAP33076 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CIITAP33076 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.47■□□□□ 0.39
CIITAP33076 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CIITAP33076 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms