Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.88□□□□□ -0.03
SDC1P18827 Z97205.2-201ENST00000564697 1639 ntBASIC14.88□□□□□ -0.03
SDC1P18827 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.88□□□□□ -0.03
SDC1P18827 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
SDC1P18827 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 CNN2P11-201ENST00000429351 262 ntBASIC14.88□□□□□ -0.03
SDC1P18827 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 KRT18P64-201ENST00000434946 1219 ntBASIC14.88□□□□□ -0.03
SDC1P18827 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 AP006288.1-201ENST00000446065 395 ntBASIC14.88□□□□□ -0.03
SDC1P18827 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SDC1P18827 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 AC025048.3-201ENST00000590609 569 ntBASIC14.88□□□□□ -0.03
SDC1P18827 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 AC005702.4-201ENST00000618393 416 ntBASIC14.88□□□□□ -0.03
SDC1P18827 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SDC1P18827 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SDC1P18827 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
SDC1P18827 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.88□□□□□ -0.03
SDC1P18827 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SDC1P18827 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.87□□□□□ -0.03
SDC1P18827 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.87□□□□□ -0.03
SDC1P18827 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SDC1P18827 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 FGD5P1-202ENST00000614866 2498 ntBASIC14.87□□□□□ -0.03
SDC1P18827 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.87□□□□□ -0.03
SDC1P18827 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.87□□□□□ -0.03
SDC1P18827 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 RPL37AP1-201ENST00000412502 279 ntBASIC14.87□□□□□ -0.03
SDC1P18827 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
SDC1P18827 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.87□□□□□ -0.03
SDC1P18827 SERBP1P3-201ENST00000459980 809 ntBASIC14.87□□□□□ -0.03
SDC1P18827 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.87□□□□□ -0.03
SDC1P18827 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 AC092865.5-201ENST00000545435 363 ntBASIC14.87□□□□□ -0.03
SDC1P18827 AC015910.1-201ENST00000579400 975 ntBASIC14.87□□□□□ -0.03
SDC1P18827 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.87□□□□□ -0.03
SDC1P18827 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
SDC1P18827 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 LINC00628-201ENST00000628516 1289 ntBASIC14.87□□□□□ -0.03
SDC1P18827 AL033527.5-202ENST00000641632 1098 ntBASIC14.87□□□□□ -0.03
SDC1P18827 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SDC1P18827 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SDC1P18827 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SDC1P18827 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms