Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC036164.1-201ENST00000570544 333 ntBASIC14.22□□□□□ -0.13
HOXD4P09016 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
HOXD4P09016 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXD4P09016 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXD4P09016 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
HOXD4P09016 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.22□□□□□ -0.13
HOXD4P09016 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 AP002414.2-201ENST00000591780 3365 ntBASIC14.22□□□□□ -0.13
HOXD4P09016 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 AC013268.4-201ENST00000637413 2228 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD4P09016 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HOXD4P09016 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD4P09016 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD4P09016 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXD4P09016 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD4P09016 AC007389.4-201ENST00000454674 793 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 RN7SL399P-201ENST00000471648 279 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 ELK1P1-201ENST00000485699 580 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD4P09016 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD4P09016 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.21□□□□□ -0.13
HOXD4P09016 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXD4P09016 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 AC004790.1-201ENST00000612686 536 ntBASIC14.21□□□□□ -0.13
HOXD4P09016 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXD4P09016 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXD4P09016 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HOXD4P09016 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD4P09016 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD4P09016 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.21□□□□□ -0.14
HOXD4P09016 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD4P09016 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD4P09016 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.21□□□□□ -0.14
HOXD4P09016 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HOXD4P09016 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.21□□□□□ -0.14
HOXD4P09016 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HOXD4P09016 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 RNF216P1-203ENST00000404404 2427 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HOXD4P09016 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 MIR658-201ENST00000385210 100 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 HAUS4P1-201ENST00000406739 1145 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 AL589987.1-201ENST00000453380 819 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms