Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 TUBB1P2-201ENST00000422712 1306 ntBASIC20.25■□□□□ 0.83
COL3A1P02461 TUBB1P1-201ENST00000503144 1300 ntBASIC20.25■□□□□ 0.83
COL3A1P02461 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC20.24■□□□□ 0.83
COL3A1P02461 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.24■□□□□ 0.83
COL3A1P02461 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL3A1P02461 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL3A1P02461 MIR1202-201ENST00000408529 83 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.24■□□□□ 0.83
COL3A1P02461 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
COL3A1P02461 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.24■□□□□ 0.83
COL3A1P02461 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.24■□□□□ 0.83
COL3A1P02461 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.24■□□□□ 0.83
COL3A1P02461 AC138466.3-201ENST00000619983 221 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 AL162727.3-201ENST00000635661 2787 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL3A1P02461 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 CD8B2-202ENST00000417670 633 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.24■□□□□ 0.83
COL3A1P02461 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 AL355994.2-201ENST00000447882 704 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.24■□□□□ 0.83
COL3A1P02461 AC079316.1-201ENST00000548397 411 ntBASIC20.24■□□□□ 0.83
COL3A1P02461 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC20.24■□□□□ 0.83
COL3A1P02461 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.24■□□□□ 0.83
COL3A1P02461 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.24■□□□□ 0.83
COL3A1P02461 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL3A1P02461 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC20.23■□□□□ 0.83
COL3A1P02461 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL3A1P02461 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC20.23■□□□□ 0.83
COL3A1P02461 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 REXO1L6P-201ENST00000603433 1515 ntBASIC20.23■□□□□ 0.83
COL3A1P02461 AC006486.2-201ENST00000624246 2199 ntBASIC20.23■□□□□ 0.83
COL3A1P02461 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 RN7SKP230-201ENST00000365642 335 ntBASIC20.23■□□□□ 0.83
COL3A1P02461 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.23■□□□□ 0.83
COL3A1P02461 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL3A1P02461 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
COL3A1P02461 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL3A1P02461 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL3A1P02461 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL3A1P02461 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL3A1P02461 AC073347.1-201ENST00000421633 2643 ntBASIC20.22■□□□□ 0.83
COL3A1P02461 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL3A1P02461 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 AC091951.1-201ENST00000512854 2465 ntBASIC20.22■□□□□ 0.83
COL3A1P02461 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.22■□□□□ 0.83
COL3A1P02461 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 RN7SKP175-201ENST00000408472 289 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms