Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF40O75150 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF40O75150 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RNF40O75150 KRT8P49-201ENST00000604166 1432 ntBASIC16.96■□□□□ 0.31
RNF40O75150 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
RNF40O75150 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.96■□□□□ 0.31
RNF40O75150 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF40O75150 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
RNF40O75150 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
RNF40O75150 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 GK-202ENST00000378941 458 ntTSL 3 BASIC16.96■□□□□ 0.31
RNF40O75150 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.96■□□□□ 0.31
RNF40O75150 AC142381.1-201ENST00000426099 345 ntBASIC16.96■□□□□ 0.31
RNF40O75150 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.96■□□□□ 0.31
RNF40O75150 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
RNF40O75150 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF40O75150 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF40O75150 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
RNF40O75150 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF40O75150 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.96■□□□□ 0.3
RNF40O75150 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.96■□□□□ 0.3
RNF40O75150 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
RNF40O75150 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
RNF40O75150 AL512652.2-201ENST00000625156 1716 ntBASIC16.96■□□□□ 0.3
RNF40O75150 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
RNF40O75150 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.96■□□□□ 0.3
RNF40O75150 AC100757.3-201ENST00000622361 1406 ntBASIC16.96■□□□□ 0.3
RNF40O75150 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
RNF40O75150 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.95■□□□□ 0.3
RNF40O75150 SNX33P1-201ENST00000592116 1762 ntBASIC16.95■□□□□ 0.3
RNF40O75150 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RNF40O75150 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RNF40O75150 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 MRPS18AP1-201ENST00000414458 589 ntBASIC16.95■□□□□ 0.3
RNF40O75150 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
RNF40O75150 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.95■□□□□ 0.3
RNF40O75150 RARRES2P9-201ENST00000565168 469 ntBASIC16.95■□□□□ 0.3
RNF40O75150 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.95■□□□□ 0.3
RNF40O75150 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 CYP2A7P1-201ENST00000595391 815 ntBASIC16.95■□□□□ 0.3
RNF40O75150 AC003101.2-201ENST00000612557 442 ntBASIC16.95■□□□□ 0.3
RNF40O75150 AC018529.1-201ENST00000613063 361 ntBASIC16.95■□□□□ 0.3
RNF40O75150 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RNF40O75150 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
RNF40O75150 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.95■□□□□ 0.3
RNF40O75150 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.95■□□□□ 0.3
RNF40O75150 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF40O75150 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF40O75150 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.94■□□□□ 0.3
RNF40O75150 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RNF40O75150 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
RNF40O75150 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms