Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC3O15379 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 REXO1L2P-201ENST00000425429 2069 ntBASIC15.23■□□□□ 0.03
HDAC3O15379 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.23■□□□□ 0.03
HDAC3O15379 TFAMP1-201ENST00000412727 736 ntBASIC15.23■□□□□ 0.03
HDAC3O15379 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC3O15379 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC3O15379 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC3O15379 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC3O15379 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
HDAC3O15379 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC3O15379 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 MIR346-201ENST00000362234 95 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
HDAC3O15379 AL355306.1-201ENST00000415580 579 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
HDAC3O15379 AL671277.1-201ENST00000429656 993 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 AC007967.2-201ENST00000432613 625 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.22■□□□□ 0.03
HDAC3O15379 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.22■□□□□ 0.03
HDAC3O15379 AC011467.4-201ENST00000594891 528 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 AL513190.1-201ENST00000621254 727 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
HDAC3O15379 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC3O15379 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 AC104109.2-201ENST00000602919 1418 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC3O15379 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC3O15379 AC097376.2-205ENST00000610159 5334 ntBASIC15.22■□□□□ 0.03
HDAC3O15379 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms