Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 SERPINA13P-202ENST00000478994 924 ntBASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 SUPT4H1P2-201ENST00000501248 353 ntBASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 FGFR3P5-201ENST00000564496 886 ntBASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 AP005019.2-201ENST00000615104 511 ntBASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 AC112504.1-201ENST00000623415 1841 ntBASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 AL603832.2-201ENST00000566195 2125 ntBASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 KRT18P25-201ENST00000508931 1278 ntBASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SHROOM4Q9ULL8 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 GAPDHP40-201ENST00000505218 1006 ntBASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SHROOM4Q9ULL8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 AC009090.5-201ENST00000624886 2285 ntBASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 AL133267.1-201ENST00000398220 340 ntBASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 AL008707.1-201ENST00000422498 534 ntBASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 AC022217.1-201ENST00000521069 738 ntBASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 CFL1-214ENST00000534769 758 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 MIR3907-201ENST00000579424 151 ntBASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC29.32■■■□□ 2.28
SHROOM4Q9ULL8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 PARVG-202ENST00000415224 999 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 AC104784.1-201ENST00000473096 294 ntBASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 AL645939.5-201ENST00000606834 243 ntBASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms