Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 BANF1P1-201ENST00000553684 263 ntBASIC15.42■□□□□ 0.06
MKS1Q9NXB0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 SPDYE9P-201ENST00000570642 692 ntBASIC15.42■□□□□ 0.06
MKS1Q9NXB0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 SPDYE10P-202ENST00000612005 668 ntBASIC15.42■□□□□ 0.06
MKS1Q9NXB0 SPDYE8P-202ENST00000612377 668 ntBASIC15.42■□□□□ 0.06
MKS1Q9NXB0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 MTHFR-210ENST00000641407 2387 ntBASIC15.42■□□□□ 0.06
MKS1Q9NXB0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.42■□□□□ 0.06
MKS1Q9NXB0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AL450487.1-201ENST00000426799 995 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 FAM58CP-201ENST00000435741 640 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 TARDBPP1-201ENST00000442013 1203 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AL591424.1-201ENST00000442569 1213 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 RNA5SP416-201ENST00000516838 111 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 REXO1L4P-201ENST00000605109 1937 ntBASIC15.41■□□□□ 0.06
MKS1Q9NXB0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
MKS1Q9NXB0 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 IGHV3-62-201ENST00000520057 340 ntBASIC15.4■□□□□ 0.06
MKS1Q9NXB0 SLC25A39P2-201ENST00000537614 270 ntBASIC15.4■□□□□ 0.06
MKS1Q9NXB0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 AC041040.2-201ENST00000622926 2899 ntBASIC15.4■□□□□ 0.06
MKS1Q9NXB0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MKS1Q9NXB0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms