Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.35□□□□□ -0.27
COL12A1Q99715 AL135901.1-201ENST00000451812 333 ntBASIC13.35□□□□□ -0.27
COL12A1Q99715 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC13.35□□□□□ -0.27
COL12A1Q99715 AC009779.1-201ENST00000551138 283 ntBASIC13.35□□□□□ -0.27
COL12A1Q99715 NUDT4P2-201ENST00000578341 546 ntBASIC13.35□□□□□ -0.27
COL12A1Q99715 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.35□□□□□ -0.27
COL12A1Q99715 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL12A1Q99715 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL12A1Q99715 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
COL12A1Q99715 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL12A1Q99715 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
COL12A1Q99715 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC026803.1-201ENST00000569130 274 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC097359.3-201ENST00000603982 1210 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 KRT8P29-201ENST00000420409 1371 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.34□□□□□ -0.27
COL12A1Q99715 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 CR383656.3-201ENST00000551315 183 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 MIR4783-201ENST00000580343 82 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 AL158070.2-201ENST00000623713 1621 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
COL12A1Q99715 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.34□□□□□ -0.27
COL12A1Q99715 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 AP001282.1-201ENST00000531301 1499 ntBASIC13.34□□□□□ -0.27
COL12A1Q99715 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL12A1Q99715 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.34□□□□□ -0.27
COL12A1Q99715 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
COL12A1Q99715 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.33□□□□□ -0.27
COL12A1Q99715 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC13.33□□□□□ -0.27
COL12A1Q99715 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.33□□□□□ -0.27
COL12A1Q99715 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.33□□□□□ -0.27
COL12A1Q99715 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL12A1Q99715 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.33□□□□□ -0.28
COL12A1Q99715 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 AC005915.1-201ENST00000624912 2018 ntBASIC13.33□□□□□ -0.28
COL12A1Q99715 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
COL12A1Q99715 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL12A1Q99715 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms