Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 RN7SL258P-201ENST00000478664 300 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC020916.1-201ENST00000587762 1774 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 PHKG1P2-201ENST00000457537 863 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AL450472.2-201ENST00000603663 1156 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 PCDHB19P-201ENST00000570871 2371 ntBASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 AC020763.4-201ENST00000623414 4170 ntBASIC15.08■□□□□ 0.01
VPS13AQ96RL7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 TUBB8P8-201ENST00000458717 1058 ntBASIC15.08■□□□□ 0.01
VPS13AQ96RL7 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 AC005632.3-201ENST00000605544 308 ntBASIC15.08■□□□□ 0.01
VPS13AQ96RL7 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.08■□□□□ 0.01
VPS13AQ96RL7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.08■□□□□ 0
VPS13AQ96RL7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC15.08■□□□□ 0
VPS13AQ96RL7 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 REXO1L2P-201ENST00000425429 2069 ntBASIC15.08■□□□□ 0
VPS13AQ96RL7 AC010491.1-201ENST00000563101 2797 ntBASIC15.08■□□□□ 0
VPS13AQ96RL7 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.08■□□□□ 0
VPS13AQ96RL7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
VPS13AQ96RL7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC15.08■□□□□ 0
VPS13AQ96RL7 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.08■□□□□ 0
VPS13AQ96RL7 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.08■□□□□ 0
VPS13AQ96RL7 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.08■□□□□ 0
VPS13AQ96RL7 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC15.08■□□□□ 0
VPS13AQ96RL7 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0
VPS13AQ96RL7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
VPS13AQ96RL7 KRT8P29-201ENST00000420409 1371 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.07■□□□□ 0
VPS13AQ96RL7 IL9RP3-201ENST00000442856 1674 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 AP001282.1-201ENST00000531301 1499 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
VPS13AQ96RL7 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC15.07■□□□□ 0
VPS13AQ96RL7 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.07■□□□□ 0
VPS13AQ96RL7 AC027237.1-201ENST00000560942 655 ntBASIC15.07■□□□□ 0
VPS13AQ96RL7 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC15.07■□□□□ 0
VPS13AQ96RL7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS13AQ96RL7 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms