Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AL359711.2-201ENST00000563105 872 ntBASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX2-3Q8TAU0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 VDAC1P7-201ENST00000462417 847 ntBASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 AC025181.2-201ENST00000606994 802 ntBASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX2-3Q8TAU0 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AC099336.1-201ENST00000417053 1171 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 DRD5P1-201ENST00000456605 1438 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AC108725.1-201ENST00000495472 409 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 SLC25A47P1-201ENST00000531577 414 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AC124283.3-201ENST00000570869 594 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 AL022328.1-201ENST00000610050 478 ntBASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms