Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 GNRHR2-203ENST00000581100 1187 ntBASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC60Q8IWA6 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC60Q8IWA6 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 CTBP2P5-201ENST00000454986 1264 ntBASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 FTH1P14-201ENST00000482930 551 ntBASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AC104989.1-201ENST00000519711 778 ntBASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 COX11-210ENST00000639671 696 ntBASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC60Q8IWA6 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms