Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AC135983.4-201ENST00000564116 1262 ntBASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AC009955.4-201ENST00000597192 544 ntBASIC20.84■□□□□ 0.93
NPHP3Q7Z494 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 RN7SL8P-201ENST00000461771 266 ntBASIC20.83■□□□□ 0.93
NPHP3Q7Z494 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AL160314.3-201ENST00000556041 767 ntBASIC20.83■□□□□ 0.93
NPHP3Q7Z494 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 AL805961.1-201ENST00000642026 753 ntBASIC20.83■□□□□ 0.93
NPHP3Q7Z494 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP3Q7Z494 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP3Q7Z494 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 RN7SKP214-201ENST00000364208 315 ntBASIC20.82■□□□□ 0.92
NPHP3Q7Z494 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 HNRNPA1P36-201ENST00000521313 955 ntBASIC20.82■□□□□ 0.92
NPHP3Q7Z494 AC090857.1-201ENST00000527400 390 ntBASIC20.82■□□□□ 0.92
NPHP3Q7Z494 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 AL645728.2-202ENST00000641679 227 ntBASIC20.82■□□□□ 0.92
NPHP3Q7Z494 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 AP000593.2-201ENST00000542775 1433 ntBASIC20.82■□□□□ 0.92
NPHP3Q7Z494 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP3Q7Z494 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms