Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AC023024.2-201ENST00000623561 1993 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 TCAF2P1-201ENST00000291129 2421 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 RPL13P2-201ENST00000440687 659 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 LINC01115-203ENST00000606068 577 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AC073592.8-201ENST00000624126 511 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 AC084364.1-201ENST00000551967 1556 ntBASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ZNF549Q6P9A3 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AC148477.4-201ENST00000613430 1793 ntBASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AC069120.2-201ENST00000524091 540 ntBASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AC140878.1-201ENST00000565277 250 ntBASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
ZNF549Q6P9A3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ZNF549Q6P9A3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms