Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 AC002472.2-201ENST00000442739 958 ntBASIC18.88■□□□□ 0.61
VPS53Q5VIR6 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 SRD5A3P1-201ENST00000603021 949 ntBASIC18.88■□□□□ 0.61
VPS53Q5VIR6 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS53Q5VIR6 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 SPTLC1P1-201ENST00000447199 261 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AC092337.1-201ENST00000568699 1129 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 MIR4745-201ENST00000577608 62 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AC023157.3-201ENST00000619086 2088 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AC006486.2-201ENST00000624246 2199 ntBASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS53Q5VIR6 AL109954.1-202ENST00000564051 2148 ntBASIC18.86■□□□□ 0.61
VPS53Q5VIR6 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 LINC02560-201ENST00000596379 459 ntBASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS53Q5VIR6 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms