Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 CTBP2P8-201ENST00000422584 1330 ntBASIC10.92□□□□□ -0.66
PRKDCP78527 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 AC083801.1-201ENST00000491689 358 ntBASIC10.92□□□□□ -0.66
PRKDCP78527 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC10.92□□□□□ -0.66
PRKDCP78527 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 AL390961.4-201ENST00000623958 2535 ntBASIC10.92□□□□□ -0.66
PRKDCP78527 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 SURF4-203ENST00000371991 715 ntTSL 3 BASIC10.91□□□□□ -0.66
PRKDCP78527 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 NEFHP1-201ENST00000412845 2629 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
PRKDCP78527 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 BAX-205ENST00000391871 687 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 MIR3180-2-201ENST00000581748 88 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 NAV1-210ENST00000593583 726 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC10.91□□□□□ -0.66
PRKDCP78527 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC055811.4-201ENST00000624039 1754 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC009145.4-201ENST00000625119 1294 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 AC008536.3-201ENST00000623282 1599 ntBASIC10.91□□□□□ -0.66
PRKDCP78527 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC10.91□□□□□ -0.66
PRKDCP78527 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
PRKDCP78527 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
PRKDCP78527 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 AL807761.2-201ENST00000422849 729 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC10.9□□□□□ -0.66
PRKDCP78527 AC022616.1-201ENST00000518688 554 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 KRT18P9-201ENST00000604826 1300 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 FLII-221ENST00000578558 2377 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 ABR-203ENST00000536794 2213 ntTSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 BAK1P1-201ENST00000317045 636 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC10.9□□□□□ -0.66
PRKDCP78527 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms