Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.12□□□□□ -0.63
RPL39P62891 FIS1-203ENST00000442303 631 ntTSL 3 BASIC11.12□□□□□ -0.63
RPL39P62891 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC11.12□□□□□ -0.63
RPL39P62891 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.12□□□□□ -0.63
RPL39P62891 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 BNIP3P1-202ENST00000550043 1585 ntBASIC11.11□□□□□ -0.63
RPL39P62891 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
RPL39P62891 AL645939.2-201ENST00000427340 991 ntBASIC11.11□□□□□ -0.63
RPL39P62891 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 SAPCD2P3-201ENST00000455031 850 ntBASIC11.11□□□□□ -0.63
RPL39P62891 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC11.11□□□□□ -0.63
RPL39P62891 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
RPL39P62891 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 AC243562.2-201ENST00000561247 970 ntBASIC11.11□□□□□ -0.63
RPL39P62891 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
RPL39P62891 CLEC4GP1-201ENST00000596555 870 ntBASIC11.11□□□□□ -0.63
RPL39P62891 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 AC005593.1-201ENST00000624894 515 ntBASIC11.11□□□□□ -0.63
RPL39P62891 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC11.11□□□□□ -0.63
RPL39P62891 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 AP002414.3-201ENST00000589352 1468 ntBASIC11.11□□□□□ -0.63
RPL39P62891 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
RPL39P62891 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.11□□□□□ -0.63
RPL39P62891 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
RPL39P62891 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC11.11□□□□□ -0.63
RPL39P62891 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms