Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.29■□□□□ 0.52
COL4A5P29400 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL4A5P29400 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A5P29400 RN7SKP230-201ENST00000365642 335 ntBASIC18.29■□□□□ 0.52
COL4A5P29400 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
COL4A5P29400 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 AC090857.1-201ENST00000527400 390 ntBASIC18.29■□□□□ 0.52
COL4A5P29400 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A5P29400 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A5P29400 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A5P29400 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 AC051619.9-201ENST00000623237 597 ntBASIC18.29■□□□□ 0.52
COL4A5P29400 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 AC020910.5-201ENST00000623668 1865 ntBASIC18.29■□□□□ 0.52
COL4A5P29400 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A5P29400 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A5P29400 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A5P29400 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 NDUFS6P1-201ENST00000485187 316 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL4A5P29400 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.28■□□□□ 0.52
COL4A5P29400 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 AC007881.3-201ENST00000608897 607 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 AC242376.2-201ENST00000619355 883 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A5P29400 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.28■□□□□ 0.52
COL4A5P29400 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 DUX4L46-201ENST00000566845 751 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 MIR3677-201ENST00000578964 60 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A5P29400 RPL17P45-201ENST00000586289 509 ntBASIC18.28■□□□□ 0.52
COL4A5P29400 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A5P29400 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A5P29400 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A5P29400 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A5P29400 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A5P29400 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL4A5P29400 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 TNRC18P3-201ENST00000441896 2691 ntBASIC18.27■□□□□ 0.52
COL4A5P29400 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A5P29400 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A5P29400 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A5P29400 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A5P29400 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A5P29400 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.27■□□□□ 0.52
COL4A5P29400 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.27■□□□□ 0.52
COL4A5P29400 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms