Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.95■□□□□ 0.14
COL9A1P20849 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.95■□□□□ 0.14
COL9A1P20849 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL9A1P20849 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
COL9A1P20849 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 RPS9P1-201ENST00000419943 583 ntBASIC15.94■□□□□ 0.14
COL9A1P20849 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.94■□□□□ 0.14
COL9A1P20849 AC005740.2-201ENST00000511085 419 ntBASIC15.94■□□□□ 0.14
COL9A1P20849 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC15.94■□□□□ 0.14
COL9A1P20849 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.94■□□□□ 0.14
COL9A1P20849 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 AL450472.2-201ENST00000603663 1156 ntBASIC15.94■□□□□ 0.14
COL9A1P20849 AC097359.3-201ENST00000603982 1210 ntBASIC15.94■□□□□ 0.14
COL9A1P20849 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC15.94■□□□□ 0.14
COL9A1P20849 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.94■□□□□ 0.14
COL9A1P20849 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL9A1P20849 AGGF1P2-201ENST00000426656 2106 ntBASIC15.94■□□□□ 0.14
COL9A1P20849 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.94■□□□□ 0.14
COL9A1P20849 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL9A1P20849 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC15.93■□□□□ 0.14
COL9A1P20849 AC136604.1-201ENST00000418535 575 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.93■□□□□ 0.14
COL9A1P20849 VDAC1P7-201ENST00000462417 847 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC15.93■□□□□ 0.14
COL9A1P20849 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC15.93■□□□□ 0.14
COL9A1P20849 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.93■□□□□ 0.14
COL9A1P20849 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.93■□□□□ 0.14
COL9A1P20849 AP002803.1-201ENST00000528836 498 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.93■□□□□ 0.14
COL9A1P20849 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.93■□□□□ 0.14
COL9A1P20849 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL9A1P20849 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 AC022960.2-201ENST00000616300 666 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 YRDCP1-201ENST00000621419 643 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 BX539320.1-201ENST00000623759 877 ntBASIC15.93■□□□□ 0.14
COL9A1P20849 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
COL9A1P20849 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.93■□□□□ 0.14
COL9A1P20849 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL9A1P20849 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms