Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
MSH3P20585 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.6■□□□□ 0.09
MSH3P20585 AC074338.1-201ENST00000416825 156 ntBASIC15.6■□□□□ 0.09
MSH3P20585 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.6■□□□□ 0.09
MSH3P20585 AC009118.2-201ENST00000613275 655 ntBASIC15.6■□□□□ 0.09
MSH3P20585 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 AC020658.6-201ENST00000623564 1870 ntBASIC15.6■□□□□ 0.09
MSH3P20585 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
MSH3P20585 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.6■□□□□ 0.09
MSH3P20585 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.6■□□□□ 0.09
MSH3P20585 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSH3P20585 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
MSH3P20585 AC104794.3-201ENST00000566840 1248 ntBASIC15.59■□□□□ 0.09
MSH3P20585 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
MSH3P20585 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 AF228730.6-201ENST00000641497 218 ntBASIC15.59■□□□□ 0.09
MSH3P20585 AC084121.3-201ENST00000641716 218 ntBASIC15.59■□□□□ 0.09
MSH3P20585 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
MSH3P20585 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.59■□□□□ 0.09
MSH3P20585 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSH3P20585 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
MSH3P20585 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.58■□□□□ 0.09
MSH3P20585 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.58■□□□□ 0.09
MSH3P20585 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSH3P20585 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms