Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC068587.6-202ENST00000641839 5619 ntBASIC14.9□□□□□ -0.02
SDC1P18827 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 CETN4P-206ENST00000642099 2168 ntBASIC14.9□□□□□ -0.02
SDC1P18827 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SDC1P18827 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SDC1P18827 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
SDC1P18827 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.9□□□□□ -0.02
SDC1P18827 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.9□□□□□ -0.02
SDC1P18827 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 SLED1-202ENST00000512051 380 ntBASIC14.9□□□□□ -0.02
SDC1P18827 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.9□□□□□ -0.02
SDC1P18827 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.9□□□□□ -0.02
SDC1P18827 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
SDC1P18827 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.9□□□□□ -0.02
SDC1P18827 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SDC1P18827 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
SDC1P18827 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SDC1P18827 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 AC254562.1-201ENST00000417586 456 ntBASIC14.89□□□□□ -0.03
SDC1P18827 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.89□□□□□ -0.03
SDC1P18827 AL512356.2-201ENST00000546955 174 ntBASIC14.89□□□□□ -0.03
SDC1P18827 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 AC027612.4-201ENST00000605371 583 ntBASIC14.89□□□□□ -0.03
SDC1P18827 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.89□□□□□ -0.03
SDC1P18827 MIR6069-201ENST00000620069 79 ntBASIC14.89□□□□□ -0.03
SDC1P18827 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.89□□□□□ -0.03
SDC1P18827 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
SDC1P18827 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 AJ011931.1-201ENST00000618749 2492 ntBASIC14.89□□□□□ -0.03
SDC1P18827 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SDC1P18827 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.89□□□□□ -0.03
SDC1P18827 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SDC1P18827 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms