Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 GHSR-202ENST00000427970 912 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.12■□□□□ 0.01
HOXC4P09017 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.12■□□□□ 0.01
HOXC4P09017 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.12■□□□□ 0.01
HOXC4P09017 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.12■□□□□ 0.01
HOXC4P09017 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 AL596257.1-201ENST00000641463 2694 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 PCDHA1-201ENST00000378133 2726 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 AC090616.6-203ENST00000579186 1945 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 AC148477.4-201ENST00000613430 1793 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 CICP13-201ENST00000422015 2789 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 HLA-V-201ENST00000429037 534 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 RNA5SP486-201ENST00000515961 83 ntBASIC15.11■□□□□ 0.01
HOXC4P09017 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.11■□□□□ 0.01
HOXC4P09017 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXC4P09017 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXC4P09017 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXC4P09017 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
HOXC4P09017 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.1■□□□□ 0.01
HOXC4P09017 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 AC020658.6-201ENST00000623564 1870 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.1■□□□□ 0.01
HOXC4P09017 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HOXC4P09017 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HOXC4P09017 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.1■□□□□ 0.01
HOXC4P09017 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.1■□□□□ 0.01
HOXC4P09017 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 BNIP3P42-201ENST00000454982 569 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXC4P09017 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.1■□□□□ 0.01
HOXC4P09017 AC022616.1-201ENST00000518688 554 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.1■□□□□ 0.01
HOXC4P09017 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.1■□□□□ 0.01
HOXC4P09017 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.1■□□□□ 0.01
HOXC4P09017 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
HOXC4P09017 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.1■□□□□ 0.01
HOXC4P09017 AL583810.1-201ENST00000553344 1045 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 AC023310.1-201ENST00000554836 735 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.1■□□□□ 0.01
HOXC4P09017 DUX4L45-201ENST00000566406 1057 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 BNIP3P29-201ENST00000598302 571 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 AC011447.5-201ENST00000616168 564 ntBASIC15.1■□□□□ 0.01
HOXC4P09017 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.1■□□□□ 0.01
HOXC4P09017 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms