Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.9■□□□□ 0.46
COL2A1P02458 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.9■□□□□ 0.46
COL2A1P02458 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 AC090616.6-203ENST00000579186 1945 ntBASIC17.9■□□□□ 0.46
COL2A1P02458 KRT8P4-201ENST00000509735 1454 ntBASIC17.9■□□□□ 0.46
COL2A1P02458 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.9■□□□□ 0.46
COL2A1P02458 IGHJ2P-201ENST00000454480 60 ntBASIC17.9■□□□□ 0.46
COL2A1P02458 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.9■□□□□ 0.46
COL2A1P02458 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.9■□□□□ 0.46
COL2A1P02458 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.9■□□□□ 0.46
COL2A1P02458 AC138649.2-201ENST00000615886 705 ntBASIC17.9■□□□□ 0.46
COL2A1P02458 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.9■□□□□ 0.46
COL2A1P02458 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL2A1P02458 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
COL2A1P02458 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 AC012508.2-201ENST00000567613 1472 ntBASIC17.9■□□□□ 0.46
COL2A1P02458 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL2A1P02458 REXO1L5P-201ENST00000622260 2098 ntBASIC17.89■□□□□ 0.46
COL2A1P02458 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.89■□□□□ 0.45
COL2A1P02458 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 AC100850.1-201ENST00000506768 649 ntBASIC17.89■□□□□ 0.45
COL2A1P02458 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.89■□□□□ 0.45
COL2A1P02458 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.89■□□□□ 0.45
COL2A1P02458 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.89■□□□□ 0.45
COL2A1P02458 AC007663.3-201ENST00000609632 465 ntBASIC17.89■□□□□ 0.45
COL2A1P02458 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 AL365203.3-201ENST00000609742 2057 ntBASIC17.89■□□□□ 0.45
COL2A1P02458 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL2A1P02458 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 AL157414.3-201ENST00000624276 1954 ntBASIC17.89■□□□□ 0.45
COL2A1P02458 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL2A1P02458 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL2A1P02458 AC016700.1-201ENST00000429424 312 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.88■□□□□ 0.45
COL2A1P02458 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.88■□□□□ 0.45
COL2A1P02458 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.88■□□□□ 0.45
COL2A1P02458 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 MIR4783-201ENST00000580343 82 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 AL451050.2-201ENST00000606967 682 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 AC022748.3-201ENST00000621828 275 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL2A1P02458 CICP13-201ENST00000422015 2789 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL2A1P02458 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
COL2A1P02458 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.88■□□□□ 0.45
COL2A1P02458 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.88■□□□□ 0.45
COL2A1P02458 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
COL2A1P02458 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.88■□□□□ 0.45
COL2A1P02458 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.88■□□□□ 0.45
COL2A1P02458 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.88■□□□□ 0.45
COL2A1P02458 AC044849.1-201ENST00000519737 1188 ntBASIC17.88■□□□□ 0.45
COL2A1P02458 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL2A1P02458 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms