Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 FAM21FP-201ENST00000426241 1131 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 AC132938.4-201ENST00000623835 848 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 LINC00528-201ENST00000600723 2160 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CACNA1FO60840 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 PAUPAR-201ENST00000630360 2965 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC19.3■□□□□ 0.68
CACNA1FO60840 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 MESTP3-201ENST00000503460 968 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CACNA1FO60840 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC19.3■□□□□ 0.68
CACNA1FO60840 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1FO60840 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 AL354989.2-201ENST00000435838 1540 ntBASIC19.3■□□□□ 0.68
CACNA1FO60840 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1FO60840 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CACNA1FO60840 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CACNA1FO60840 REXO1L5P-201ENST00000622260 2098 ntBASIC19.29■□□□□ 0.68
CACNA1FO60840 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.29■□□□□ 0.68
CACNA1FO60840 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 MIR658-201ENST00000385210 100 ntBASIC19.29■□□□□ 0.68
CACNA1FO60840 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.29■□□□□ 0.68
CACNA1FO60840 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CACNA1FO60840 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CACNA1FO60840 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1FO60840 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1FO60840 AC092384.3-202ENST00000564646 2873 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC073347.1-201ENST00000421633 2643 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CACNA1FO60840 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AL136309.1-201ENST00000403917 691 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 RPS2P32-201ENST00000439199 892 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.28■□□□□ 0.68
CACNA1FO60840 KLF2P4-201ENST00000451959 1225 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms