Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 AC239868.1-201ENST00000369385 493 ntBASIC16.36■□□□□ 0.21
SOX1O00570 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.36■□□□□ 0.21
SOX1O00570 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.36■□□□□ 0.21
SOX1O00570 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.36■□□□□ 0.21
SOX1O00570 NDUFS6P1-201ENST00000485187 316 ntBASIC16.36■□□□□ 0.21
SOX1O00570 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.36■□□□□ 0.21
SOX1O00570 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 AC009955.4-201ENST00000597192 544 ntBASIC16.36■□□□□ 0.21
SOX1O00570 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.36■□□□□ 0.21
SOX1O00570 AC025262.2-201ENST00000623975 1056 ntBASIC16.36■□□□□ 0.21
SOX1O00570 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 AC134407.2-201ENST00000625089 1978 ntBASIC16.36■□□□□ 0.21
SOX1O00570 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX1O00570 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX1O00570 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX1O00570 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX1O00570 AC026320.2-201ENST00000434379 478 ntBASIC16.35■□□□□ 0.21
SOX1O00570 EIF3FP3-201ENST00000434851 1086 ntBASIC16.35■□□□□ 0.21
SOX1O00570 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 AC004837.1-201ENST00000446267 564 ntBASIC16.35■□□□□ 0.21
SOX1O00570 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX1O00570 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX1O00570 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.35■□□□□ 0.21
SOX1O00570 AC084752.1-201ENST00000509766 622 ntBASIC16.35■□□□□ 0.21
SOX1O00570 AP002490.2-201ENST00000524791 560 ntBASIC16.35■□□□□ 0.21
SOX1O00570 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.35■□□□□ 0.21
SOX1O00570 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 MIR4522-201ENST00000584932 87 ntBASIC16.35■□□□□ 0.21
SOX1O00570 MEG3_2.1-201ENST00000611456 105 ntBASIC16.35■□□□□ 0.21
SOX1O00570 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
SOX1O00570 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
SOX1O00570 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX1O00570 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX1O00570 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.35■□□□□ 0.21
SOX1O00570 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SOX1O00570 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SOX1O00570 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
SOX1O00570 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX1O00570 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SOX1O00570 AL139094.1-201ENST00000405549 1188 ntBASIC16.34■□□□□ 0.21
SOX1O00570 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SOX1O00570 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC16.34■□□□□ 0.21
SOX1O00570 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.34■□□□□ 0.21
SOX1O00570 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms