Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
ATG4BQ9Y4P1 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 TOMM22P5-201ENST00000416399 439 ntBASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SPDYE18-201ENST00000510091 1050 ntBASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AC135586.1-201ENST00000539323 574 ntBASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ATG4BQ9Y4P1 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AC138035.3-201ENST00000622706 2791 ntBASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 TIMM17BP1-201ENST00000545713 516 ntBASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AC092337.1-201ENST00000568699 1129 ntBASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms