Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 MIR1233-2-201ENST00000408138 82 ntBASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 MIR1233-1-201ENST00000408722 82 ntBASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AL161645.1-201ENST00000622716 1255 ntBASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
R3HCC1Q9Y3T6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 LINC01230-201ENST00000625222 3017 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 AC013726.1-201ENST00000563747 2285 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 MKNK2P1-201ENST00000437526 628 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 ACTG1P14-201ENST00000446382 1122 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 AC021097.1-201ENST00000607902 574 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 AL078644.1-201ENST00000609881 752 ntBASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
R3HCC1Q9Y3T6 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 HTR5BP-201ENST00000430851 1154 ntBASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
R3HCC1Q9Y3T6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms