Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 AC127383.1-201ENST00000444697 1800 ntBASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.18□□□□□ -0.3
KCNIP3Q9Y2W7 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AC005252.3-201ENST00000623855 2258 ntBASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 NME3-204ENST00000563498 920 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AL049597.2-201ENST00000565575 961 ntBASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AL121772.3-201ENST00000610840 674 ntBASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
KCNIP3Q9Y2W7 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 PMS2P7-201ENST00000506558 1336 ntBASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP3Q9Y2W7 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms