Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AC211486.1-202ENST00000416371 468 ntBASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AC211476.1-201ENST00000503899 468 ntBASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SPDYE7P-202ENST00000420373 878 ntBASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 MIR6080-201ENST00000617359 66 ntBASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 TCAF2P1-201ENST00000291129 2421 ntBASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HIF3AQ9Y2N7 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC097376.2-205ENST00000610159 5334 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC148477.4-201ENST00000613430 1793 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms