Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 AC011495.1-201ENST00000498085 584 ntBASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 AC005786.4-201ENST00000623369 682 ntBASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 PRSS30P-206ENST00000641773 873 ntBASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC023024.2-201ENST00000623561 1993 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AP001582.1-201ENST00000525856 295 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AL359258.3-201ENST00000622910 2331 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC063926.2-201ENST00000623766 1308 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AL109954.1-202ENST00000564051 2148 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 AC126365.1-201ENST00000578585 1514 ntBASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM35Q9UPQ4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 TTTY23B-201ENST00000442790 549 ntBASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AC007389.4-201ENST00000454674 793 ntBASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 SAMD11P1-201ENST00000571429 661 ntBASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 AC126177.1-201ENST00000547829 2218 ntBASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM35Q9UPQ4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM35Q9UPQ4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms