Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 COG4-212ENST00000564653 590 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 AC244452.3-201ENST00000636814 210 ntBASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 AL162727.3-201ENST00000635661 2787 ntBASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMD1Q9UGP4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ACKR1-201ENST00000368121 1240 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 BTBD6P1-201ENST00000412176 1267 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 Z93015.1-201ENST00000451718 390 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 SLED1-202ENST00000512051 380 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ACTG1P17-201ENST00000558391 1119 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AC079328.1-201ENST00000560358 952 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMD1Q9UGP4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC006449.5-201ENST00000610658 2098 ntBASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC010740.1-201ENST00000417035 684 ntBASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC007969.1-201ENST00000433675 447 ntBASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AKR7A2P1-201ENST00000460134 915 ntBASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC022137.2-201ENST00000503482 481 ntBASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms