Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AC091046.1-201ENST00000331871 207 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AL133466.1-201ENST00000447582 150 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 SERPINA13P-202ENST00000478994 924 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 RN7SL720P-201ENST00000488178 304 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 MIR5572-201ENST00000583188 137 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 ZACNP1-201ENST00000612259 710 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 PCDHA12-202ENST00000613593 2588 ntBASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC87Q9NVE4 AC084364.1-201ENST00000551967 1556 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 AC104457.1-201ENST00000401024 814 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 CYP46A4P-201ENST00000414953 267 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 AL391280.1-201ENST00000506969 1062 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 AC138649.2-201ENST00000615886 705 ntBASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC87Q9NVE4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 MIR33B-201ENST00000385104 96 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 MAGEA5-201ENST00000446757 942 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 AC022616.1-201ENST00000518688 554 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 AC005730.2-201ENST00000564549 1184 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 KRT8P4-201ENST00000509735 1454 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 LINC02447-202ENST00000501888 2146 ntBASIC19.52■□□□□ 0.72
CCDC87Q9NVE4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC87Q9NVE4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
CCDC87Q9NVE4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.52■□□□□ 0.71
CCDC87Q9NVE4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC87Q9NVE4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
CCDC87Q9NVE4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms