Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 NFIC-211ENST00000641145 8399 ntBASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AC107890.1-201ENST00000422478 521 ntBASIC16.18■□□□□ 0.18
PCDH9Q9HC56 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AC140878.1-201ENST00000565277 250 ntBASIC16.18■□□□□ 0.18
PCDH9Q9HC56 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AL589739.1-201ENST00000607720 493 ntBASIC16.18■□□□□ 0.18
PCDH9Q9HC56 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDH9Q9HC56 CICP23-201ENST00000605013 2741 ntBASIC16.18■□□□□ 0.18
PCDH9Q9HC56 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 CETN4P-206ENST00000642099 2168 ntBASIC16.17■□□□□ 0.18
PCDH9Q9HC56 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.17■□□□□ 0.18
PCDH9Q9HC56 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 AC069120.2-201ENST00000524091 540 ntBASIC16.17■□□□□ 0.18
PCDH9Q9HC56 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 AL079307.3-201ENST00000556114 283 ntBASIC16.17■□□□□ 0.18
PCDH9Q9HC56 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDH9Q9HC56 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms