Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 BOLA2P3-201ENST00000404566 256 ntBASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 KRT43P-201ENST00000434019 910 ntBASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 AP005019.2-201ENST00000615104 511 ntBASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 BX539320.1-201ENST00000623759 877 ntBASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4AQ9BY43 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 AC005229.1-201ENST00000392885 409 ntBASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 GPR53P-205ENST00000457298 1084 ntBASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 BTNL10-201ENST00000595971 695 ntBASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CHMP4AQ9BY43 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms