Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 TOMM22P5-201ENST00000416399 439 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SPDYE7P-202ENST00000420373 878 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AC092580.3-201ENST00000430932 139 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 AL844908.2-201ENST00000609461 460 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 MIR6069-201ENST00000620069 79 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 REXO1L4P-201ENST00000605109 1937 ntBASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RSPO3Q9BXY4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC015922.1-201ENST00000421102 1152 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC004967.1-201ENST00000453589 447 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 HLA-V-204ENST00000476601 1289 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC051619.7-201ENST00000568314 623 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC025181.2-201ENST00000606994 802 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AL109936.8-201ENST00000641772 604 ntBASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RSPO3Q9BXY4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms